Package: dotgen 0.1.0

Xiaoran Tong

dotgen: Gene-Set Analysis via Decorrelation by Orthogonal Transformation

Decorrelates a set of summary statistics (i.e., Z-scores or P-values per SNP) via Decorrelation by Orthogonal Transformation (DOT) approach and performs gene-set analyses by combining transformed statistic values; operations are performed with algorithms that rely only on the association summary results and the linkage disequilibrium (LD). For more details on DOT and its power, see Olga (2020) <doi:10.1371/journal.pcbi.1007819>.

Authors:Olga Vsevolozhskaya [aut], Dmitri Zaykin [aut], Xiaoran Tong [aut, cre]

dotgen_0.1.0.tar.gz
dotgen_0.1.0.zip(r-4.5)dotgen_0.1.0.zip(r-4.4)dotgen_0.1.0.zip(r-4.3)
dotgen_0.1.0.tgz(r-4.4-any)dotgen_0.1.0.tgz(r-4.3-any)
dotgen_0.1.0.tar.gz(r-4.5-noble)dotgen_0.1.0.tar.gz(r-4.4-noble)
dotgen_0.1.0.tgz(r-4.4-emscripten)dotgen_0.1.0.tgz(r-4.3-emscripten)
dotgen.pdf |dotgen.html✨
dotgen/json (API)

# Install 'dotgen' in R:
install.packages('dotgen', repos = c('https://xiaoran831213.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/xiaoran831213/dotgen/issues

On CRAN:

2.00 score 1 scripts 177 downloads 9 exports 1 dependencies

Last updated 4 years agofrom:89960cae63. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 29 2024
R-4.5-winWARNINGOct 29 2024
R-4.5-linuxWARNINGOct 29 2024
R-4.4-winWARNINGOct 29 2024
R-4.4-macWARNINGOct 29 2024
R-4.3-winWARNINGOct 29 2024
R-4.3-macWARNINGOct 29 2024

Exports:cstdotdot_artdot_artadot_chisqdot_fisherdot_rtpdot_tpmzsc

Dependencies:mvtnorm