Package: plinkFile 0.2.1

plinkFile: 'PLINK' (and 'GCTA') File Helpers

reads/write binary genotype file compatable with 'PLINK' <https://www.cog-genomics.org/plink/1.9/input#bed> into/from a R matrix; traverse genotype data one windows of variants at a time, like apply() or a for loop; reads/writes genotype relatedness/kinship matrices created by 'PLINK' <https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM> into/from a R square matrix. It is best used for bringing data produced by 'PLINK' and 'GCTA' into R workflow.

Authors:Xiaoran Tong [aut, cre]

plinkFile_0.2.1.tar.gz
plinkFile_0.2.1.zip(r-4.5)plinkFile_0.2.1.zip(r-4.4)plinkFile_0.2.1.zip(r-4.3)
plinkFile_0.2.1.tgz(r-4.4-any)plinkFile_0.2.1.tgz(r-4.3-any)
plinkFile_0.2.1.tar.gz(r-4.5-noble)plinkFile_0.2.1.tar.gz(r-4.4-noble)
plinkFile_0.2.1.tgz(r-4.4-emscripten)plinkFile_0.2.1.tgz(r-4.3-emscripten)
plinkFile.pdf |plinkFile.html✨
plinkFile/json (API)

Peer review:

Bug tracker:https://github.com/xiaoran831213/plinkfile/issues

On CRAN:

26 exports 0.65 score 0 dependencies 3 scripts 365 downloads

Last updated 2 years agofrom:e1296522a3. Checks:OK: 1 WARNING: 6. Indexed: yes.

Exports:dbdDBDebdgidi2bloopBEDnbdnfnrr2breadBEDreadBIMreadBSMreadFAMreadGRMreadIBSreadIIDreadRELreadVCMreadVIDsaveBEDsaveBSMsaveGRMscanBEDtestReadBEDtestReadBSM

Dependencies: