Package 'plinkFile'
| Title: |
'PLINK' (and 'GCTA') File Helpers |
| Description: |
reads/write binary genotype file compatable with 'PLINK'
<https://www.cog-genomics.org/plink/1.9/input#bed> into/from a
R matrix; traverse genotype data one windows of variants at a
time, like apply() or a for loop; reads/writes genotype
relatedness/kinship matrices created by 'PLINK'
<https://www.cog-genomics.org/plink/1.9/distance#make_rel> or
'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM>
into/from a R square matrix. It is best used for bringing data
produced by 'PLINK' and 'GCTA' into R workflow. |
| Authors: |
Xiaoran Tong [aut, cre] |
| Maintainer: |
Xiaoran Tong <[email protected]> |
| License: |
GPL (>= 2) |
| Version: |
0.2.1 |
| Built: |
2024-11-04 21:42:12 UTC |
| Source: |
https://github.com/xiaoran831213/plinkfile |
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